SubtiBank SubtiBank
ybfP [2018-05-24 11:36:55]
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ybfP [2018-05-24 11:36:55]

similar to transcription factor (AraC family)
locus
BSU02320
pI
6.28
mw
34.06 kDa
protein length
295 aa Sequence Blast
gene length
885 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]

    • Gene

    Coordinates
    251,427 → 252,314

    The protein

    Protein family

  • [SW|AraC family]

    • Expression and Regulation

    Operons

    genes
    [gene|BA60CF44ECA4937FA5C1720B10E7FDABA9AB4664|ybfO]-[gene|1EE8BF589ECDFD5194C86E02A627CCF81899B904|ybfP]-[gene|E06787B6AAD11070751938822F75359CE6EF299C|ybfQ]
    description
    [Pubmed|12207695]

    sigma factors

  • [protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW]: sigma factor, [Pubmed|11866510,12207695], in [regulon|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW regulon]

    • regulatory mechanism

  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|18840696,20817675], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

    • regulation

  • repressed during logarithmic growth ([protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]) [Pubmed|18840696]
    • view in new tab

    genes
    [gene|BA60CF44ECA4937FA5C1720B10E7FDABA9AB4664|ybfO]-[gene|1EE8BF589ECDFD5194C86E02A627CCF81899B904|ybfP]
    description
    [Pubmed|20817675]

    regulation

  • repressed during logarithmic growth ([protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]) [Pubmed|18840696]
    • view in new tab

    Biological materials

    Mutant

  • BKE02320 (Δ[gene|1EE8BF589ECDFD5194C86E02A627CCF81899B904|ybfP]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE02320 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGCACGCTCCAATCTCC, downstream forward: _UP4_TAGTTTTCAGACAACTACTT
  • BKK02320 (Δ[gene|1EE8BF589ECDFD5194C86E02A627CCF81899B904|ybfP]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK02320 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGCACGCTCCAATCTCC, downstream forward: _UP4_TAGTTTTCAGACAACTACTT

    • References

  • 12207695,20817675,23504016